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CSB
2005
IEEE
115views Bioinformatics» more  CSB 2005»
15 years 12 months ago
Mining Protein Sequence Motifs Representing Common 3D Structures
Understanding the relationship between protein structure and its sequence is one of the most important tasks of current bioinformatics research. In this work, recurring protein se...
Wei Zhong, Gulsah Altun, Robert W. Harrison, Phang...
BMCBI
2008
118views more  BMCBI 2008»
15 years 6 months ago
Kismeth: Analyzer of plant methylation states through bisulfite sequencing
Background: There is great interest in probing the temporal and spatial patterns of cytosine methylation states in genomes of a variety of organisms. It is hoped that this will sh...
Eyal Gruntman, Yijun Qi, R. Keith Slotkin, Ted Roe...
MICRO
1993
IEEE
131views Hardware» more  MICRO 1993»
15 years 10 months ago
Superblock formation using static program analysis
Compile-time code transformations which expose instruction-level parallelism (ILP) typically take into account the constraints imposed by all execution scenarios in the program. H...
Richard E. Hank, Scott A. Mahlke, Roger A. Bringma...
NIPS
2003
15 years 7 months ago
Inferring State Sequences for Non-linear Systems with Embedded Hidden Markov Models
We describe a Markov chain method for sampling from the distribution of the hidden state sequence in a non-linear dynamical system, given a sequence of observations. This method u...
Radford M. Neal, Matthew J. Beal, Sam T. Roweis
TCBB
2008
120views more  TCBB 2008»
15 years 6 months ago
Learning Scoring Schemes for Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
Eagu Kim, John D. Kececioglu