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BMCBI
2010
167views more  BMCBI 2010»
15 years 6 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
AAAI
2007
15 years 9 months ago
A Planning Approach for Message-Oriented Semantic Web Service Composition
In this paper, we consider the problem of composing a set of web services, where the requirements are specified in terms of the input and output messages of the composite workfl...
Zhen Liu, Anand Ranganathan, Anton Riabov
ISMB
2007
15 years 9 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
TSE
2011
134views more  TSE 2011»
15 years 1 months ago
Verifying the Evolution of Probability Distributions Governed by a DTMC
— We propose a new probabilistic temporal logic iLTL which captures properties of systems whose state can be represented by probability mass functions (pmf’s). Using iLTL, we c...
YoungMin Kwon, Gul A. Agha
ICDT
2009
ACM
130views Database» more  ICDT 2009»
16 years 7 months ago
Towards a theory of search queries
The need to manage diverse information sources has triggered the rise of very loosely structured data models, known as "dataspace models." Such information management sy...
George H. L. Fletcher, Jan Van den Bussche, Dirk V...