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BMCBI
2010
154views more  BMCBI 2010»
15 years 7 months ago
Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble
Background: Modelling the ligand binding site of a protein is an important component of understanding proteinligand interactions and is being actively studied. Even if the side ch...
Edon Sung, Sangsoo Kim, Whanchul Shin
JAIR
2008
171views more  JAIR 2008»
15 years 6 months ago
AND/OR Multi-Valued Decision Diagrams (AOMDDs) for Graphical Models
Inspired by AND/OR search spaces for graphical models recently introduced, we propose to augment Multi-Valued Decision Diagrams (MDD) with AND nodes, in order to capture function ...
Robert Mateescu, Rina Dechter, Radu Marinescu 0002
ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
15 years 4 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
NAR
2011
340views Computer Vision» more  NAR 2011»
14 years 9 months ago
CCDB: a curated database of genes involved in cervix cancer
The Cervical Cancer gene DataBase (CCDB, http:// crdd.osdd.net/raghava/ccdb) is a manually curated catalog of experimentally validated genes that are thought, or are known to be i...
Subhash M. Agarwal, Dhwani Raghav, Harinder Singh,...
KDD
2009
ACM
200views Data Mining» more  KDD 2009»
16 years 1 months ago
Visual analysis of documents with semantic graphs
In this paper, we present a technique for visual analysis of documents based on the semantic representation of text in the form of a directed graph, referred to as semantic graph....
Delia Rusu, Blaz Fortuna, Dunja Mladenic, Marko Gr...