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FOCS
2000
IEEE
15 years 11 months ago
Cache-Oblivious B-Trees
We present dynamic search-tree data structures that perform well in the setting of a hierarchical memory (including various levels of cache, disk, etc.), but do not depend on the ...
Michael A. Bender, Erik D. Demaine, Martin Farach-...
GECCO
2008
Springer
107views Optimization» more  GECCO 2008»
15 years 8 months ago
The influence of scaling and assortativity on takeover times in scale-free topologies
In evolving systems, the topological characteristics of population structure have a pronounced impact on the rate of spread of advantageous alleles, and therefore affect selective...
Joshua L. Payne, Margaret J. Eppstein
BMCBI
2010
104views more  BMCBI 2010»
15 years 7 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa
BMCBI
2007
132views more  BMCBI 2007»
15 years 7 months ago
TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences
Background: Solenoid repeat proteins of the Tetratrico Peptide Repeat (TPR) family are involved as scaffolds in a broad range of protein-protein interactions. Several resources ar...
Manjunatha R. Karpenahalli, Andrei N. Lupas, Johan...
BMCBI
2007
156views more  BMCBI 2007»
15 years 7 months ago
Accuracy of structure-based sequence alignment of automatic methods
Background: Accurate sequence alignments are essential for homology searches and for building three-dimensional structural models of proteins. Since structure is better conserved ...
Changhoon Kim, Byungkook Lee