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» Encodings of the Sequence Constraint
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BMCBI
2007
117views more  BMCBI 2007»
15 years 6 months ago
Supervised multivariate analysis of sequence groups to identify specificity determining residues
Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
Iain M. Wallace, Desmond G. Higgins
BMCBI
2008
149views more  BMCBI 2008»
15 years 6 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...
BMCBI
2010
134views more  BMCBI 2010»
15 years 6 months ago
Localizing triplet periodicity in DNA and cDNA sequences
Background: The protein-coding regions (coding exons) of a DNA sequence exhibit a triplet periodicity (TP) due to fact that coding exons contain a series of three nucleotide codon...
Liya Wang, Lincoln D. Stein
VLDB
2002
ACM
156views Database» more  VLDB 2002»
15 years 6 months ago
A Logical Framework for Scheduling Workflows under Resource Allocation Constraints
A workflow consists of a collection of coordinated tasks designed to carry out a welldefined complex process, such as catalog ordering, trip planning, or a business process in an ...
Pinar Senkul, Michael Kifer, Ismail Hakki Toroslu
CP
2006
Springer
15 years 10 months ago
The ROOTS Constraint
A wide range of counting and occurrence constraints can be specified with just two global primitives: the Range constraint, which computes the range of values used by a sequence of...
Christian Bessière, Emmanuel Hebrard, Brahi...