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» Encodings of the Sequence Constraint
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BMCBI
2010
109views more  BMCBI 2010»
15 years 6 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
TCS
1998
15 years 6 months ago
Dynamical Recognizers: Real-Time Language Recognition by Analog Computers
We consider a model of analog computation which can recognize various languages in real time. We encode an input word as a point in Rd by composing iterated maps, and then apply i...
Cristopher Moore
TCSV
2002
148views more  TCSV 2002»
15 years 6 months ago
A full-featured, error-resilient, scalable wavelet video codec based on the set partitioning in hierarchical trees (SPIHT) algor
Compressed video bitstreams require protection from channel errors in a wireless channel. The threedimensional (3-D) SPIHT coder has proved its efficiency and its real-time capabi...
Sungdae Cho, William A. Pearlman
BMCBI
2011
14 years 10 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
SOSP
2009
ACM
16 years 3 months ago
Quincy: fair scheduling for distributed computing clusters
This paper addresses the problem of scheduling concurrent jobs on clusters where application data is stored on the computing nodes. This setting, in which scheduling computations ...
Michael Isard, Vijayan Prabhakaran, Jon Currey, Ud...