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» Encodings of the Sequence Constraint
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ISMB
2007
15 years 9 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
PLANX
2008
15 years 8 months ago
XML Type Checking for Macro Tree Transducers with Holes
Macro forest transducers (mfts) extend macro tree transducers (mtts) from ranked to unranked trees. Mfts are more powerful than mtts (operating on binary tree encodings) because t...
Sebastian Maneth, Keisuke Nakano
BMCBI
2010
114views more  BMCBI 2010»
15 years 6 months ago
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray develop
Background: Microorganisms display vast diversity, and each one has its own set of genes, cell components and metabolic reactions. To assess their huge unexploited metabolic poten...
Sébastien Terrat, Eric Peyretaillade, Olivi...
PAMI
2006
358views more  PAMI 2006»
15 years 6 months ago
Recovering 3D Human Pose from Monocular Images
We describe a learning based method for recovering 3D human body pose from single images and monocular image sequences. Our approach requires neither an explicit body model nor pri...
Ankur Agarwal, Bill Triggs
BMCBI
2005
122views more  BMCBI 2005»
15 years 6 months ago
A neural strategy for the inference of SH3 domain-peptide interaction specificity
Background: The SH3 domain family is one of the most representative and widely studied cases of so-called Peptide Recognition Modules (PRM). The polyproline II motif PxxP that gen...
Enrico Ferraro, Allegra Via, Gabriele Ausiello, Ma...