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» Encodings of the Sequence Constraint
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CAV
2004
Springer
151views Hardware» more  CAV 2004»
15 years 10 months ago
QB or Not QB: An Efficient Execution Verification Tool for Memory Orderings
We study the problem of formally verifying shared memory multiprocessor executions against memory consistency models--an important step during post-silicon verification of multipro...
Ganesh Gopalakrishnan, Yue Yang, Hemanthkumar Siva...
BMCBI
2008
120views more  BMCBI 2008»
15 years 6 months ago
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
Pere Puigbò, Ignacio G. Bravo, Santiago Gar...
BMCBI
2007
100views more  BMCBI 2007»
15 years 6 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
BMCBI
2004
229views more  BMCBI 2004»
15 years 6 months ago
Automatic annotation of protein motif function with Gene Ontology terms
Background: Conserved protein sequence motifs are short stretches of amino acid sequence patterns that potentially encode the function of proteins. Several sequence pattern search...
Xinghua Lu, Chengxiang Zhai, Vanathi Gopalakrishna...
RSA
2010
81views more  RSA 2010»
15 years 4 months ago
Percolation of arbitrary words in one dimension
We consider a type of long-range percolation problem on the positive integers, motivated by earlier work of others on the appearance of (in)finite words within a site percolation...
Geoffrey R. Grimmett, Thomas M. Liggett, Thomas Ri...