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» Encodings of the Sequence Constraint
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ISMB
1993
15 years 7 months ago
Representation for Discovery of Protein Motifs
There are several dimensions and levels of complexity in which information on protein motifs may be available. For example, onedimensional sequence motifs may be associated with s...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...
CORR
2011
Springer
161views Education» more  CORR 2011»
15 years 1 months ago
Generalized Gray Codes for Local Rank Modulation
—We consider the local rank-modulation scheme in which a sliding window going over a sequence of real-valued variables induces a sequence of permutations. Local rankmodulation is...
Eyal En Gad, Michael Langberg, Moshe Schwartz, Jeh...
COMPGEOM
2011
ACM
14 years 10 months ago
Zigzag persistent homology in matrix multiplication time
We present a new algorithm for computing zigzag persistent homology, an algebraic structure which encodes changes to homology groups of a simplicial complex over a sequence of sim...
Nikola Milosavljevic, Dmitriy Morozov, Primoz Skra...
CP
2008
Springer
15 years 8 months ago
Solving a Telecommunications Feature Subscription Configuration Problem
Abstract. Call control features (e.g., call-divert, voice-mail) are primitive options to which users can subscribe off-line to personalise their service. The configuration of a fea...
David Lesaint, Deepak Mehta, Barry O'Sullivan, Lui...
BMCBI
2010
130views more  BMCBI 2010»
15 years 6 months ago
Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors
Background: Sequence comparisons make use of a one-letter representation for amino acids, the necessary quantitative information being supplied by the substitution matrices. This ...
Karel Zimmermann, Jean-François Gibrat