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» Encodings of the Sequence Constraint
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BIOCOMP
2006
15 years 7 months ago
An Approach to Selecting Putative RNA Motifs Using MDL Principle
The history of molecular biology is punctuated by a series of discoveries demonstrating the surprising breadth of biological roles of ribonucleic acid (RNA). An ensemble of evoluti...
Mohammad Anwar, Marcel Turcotte
BMCBI
2004
81views more  BMCBI 2004»
15 years 6 months ago
Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis
Background: Mutations in rpoB, the gene encoding the subunit of DNA-dependent RNA polymerase, are associated with rifampin resistance in Mycobacterium tuberculosis. Several studi...
Michael P. Cummings, Mark R. Segal
BIOCOMP
2008
15 years 8 months ago
Combinations of Context-Free Shifts and Shifts of Finite Type
A Dyck shift and a Motzkin shift are mathematical models for constraints on genetic sequences. In terms of the theory of symbolic dynamics, neither of the Dyck shift nor the Motzki...
Hiroshi Kamabe
JCB
2007
136views more  JCB 2007»
15 years 6 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
DAC
1994
ACM
15 years 10 months ago
Software Scheduling in the Co-Synthesis of Reactive Real-Time Systems
Existing software scheduling techniques limit the functions that can be implemented in software to those with a restricted class of timing constraints, in particular those with a c...
Pai H. Chou, Gaetano Borriello