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» Efficient protein alignment algorithm for protein search
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ICML
2005
IEEE
16 years 6 months ago
Propagating distributions on a hypergraph by dual information regularization
In the information regularization framework by Corduneanu and Jaakkola (2005), the distributions of labels are propagated on a hypergraph for semi-supervised learning. The learnin...
Koji Tsuda
CEC
2010
IEEE
15 years 7 months ago
A parallel framework for multi-objective evolutionary optimization
This work focuses on the development of a parallel framework method to improve the effectiveness and the efficiency of the obtained solutions by Multi-objective Evolutionary Algori...
Dipankar Dasgupta, David Camilo Becerra Romero, Al...
RECOMB
2004
Springer
16 years 6 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
BMCBI
2006
116views more  BMCBI 2006»
15 years 6 months ago
HotSwap for bioinformatics: A STRAP tutorial
Background: Bioinformatics applications are now routinely used to analyze large amounts of data. Application development often requires many cycles of optimization, compiling, and...
Christoph Gille, Peter N. Robinson
BMCBI
2007
114views more  BMCBI 2007»
15 years 6 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...