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» Efficient protein alignment algorithm for protein search
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CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 11 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...
JMLR
2010
105views more  JMLR 2010»
15 years 28 days ago
A highly efficient blocked Gibbs sampler reconstruction of multidimensional NMR spectra
Projection Reconstruction Nuclear Magnetic Resonance (PR-NMR) is a new technique to generate multi-dimensional NMR spectra, which have discrete features that are relatively sparse...
Ji Won Yoon, Simon P. Wilson, K. Hun Mok
CORR
2007
Springer
147views Education» more  CORR 2007»
15 years 6 months ago
Decomposition During Search for Propagation-Based Constraint Solvers
Abstract. We describe decomposition during search (DDS), an integration of And/Or tree search into propagation-based constraint solvers. The presented search algorithm dynamically ...
Martin Mann, Guido Tack, Sebastian Will
BMCBI
2008
323views more  BMCBI 2008»
15 years 6 months ago
A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Background: Alternative splicing is an important gene regulation mechanism. It is estimated that about 74% of multi-exon human genes have alternative splicing. High throughput tan...
Fan Mo, Xu Hong, Feng Gao, Lin Du, Jun Wang, Gilbe...
ISMB
1994
15 years 7 months ago
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
We describe and demonstrate the effectiveness of a method of predicting protein secondary structures, sheet regions in particular, using a class of stochastic tree grammars as rep...
Hiroshi Mamitsuka, Naoki Abe