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» Efficient protein alignment algorithm for protein search
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NAR
2006
119views more  NAR 2006»
15 years 6 months ago
ChloroplastDB: the Chloroplast Genome Database
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene...
Liying Cui, Narayanan Veeraraghavan, Alexander Ric...
IPPS
2006
IEEE
16 years 5 days ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
BMCBI
2010
160views more  BMCBI 2010»
15 years 1 months ago
eHive: An Artificial Intelligence workflow system for genomic analysis
Background: The Ensembl project produces updates to its comparative genomics resources with each of its several releases per year. During each release cycle approximately two week...
Jessica Severin, Kathryn Beal, Albert J. Vilella, ...
BMCBI
2010
152views more  BMCBI 2010»
15 years 6 months ago
FITBAR: a web tool for the robust prediction of prokaryotic regulons
Background: The binding of regulatory proteins to their specific DNA targets determines the accurate expression of the neighboring genes. The in silico prediction of new binding s...
Jacques Oberto
EC
2010
176views ECommerce» more  EC 2010»
15 years 3 months ago
Learning Factorizations in Estimation of Distribution Algorithms Using Affinity Propagation
Estimation of distribution algorithms (EDAs) that use marginal product model factorizations have been widely applied to a broad range of, mainly binary, optimization problems. In ...
Roberto Santana, Pedro Larrañaga, Jos&eacut...