607 search results - page 63 / 122 » Efficient protein alignment algorithm for protein search |
232
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BMCBI
2007
15 years 6 months ago
2007
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
175
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IMSCCS
2006
IEEE
16 years 6 days ago
2006
IEEE
Background: Hydrophobins are fungal proteins that can turn into amphipathic membranes at hydrophilic/hydrophobic interfaces by self-assembly. The assemblages by Class I hydrophobi...
207
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NAR
2010
15 years 29 days ago
2010
Evaluating the accuracy of multiple sequence alignment (MSA) is critical for virtually every comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE ...
163
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SC
2003
ACM
15 years 11 months ago
2003
ACM
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
141
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BMCBI
2010
15 years 6 months ago
2010
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...