607 search results - page 31 / 122 » Efficient protein alignment algorithm for protein search |
142
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BMCBI
2006
15 years 6 months ago
2006
Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
139
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ICDM
2009
IEEE
16 years 19 days ago
2009
IEEE
Correlated motif mining (CMM) is the problem to find overrepresented pairs of patterns, called motif pairs, in interacting protein sequences. Algorithmic solutions for CMM thereb...
125
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BIRD
2008
Springer
15 years 8 months ago
2008
Springer
Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
158
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IPPS
2006
IEEE
16 years 11 hour ago
2006
IEEE
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
171
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ISMB
1993
15 years 7 months ago
1993
A Bayesian method for estimating the amino acid distributions in the states of a hidden Markov model (HMM) for a protein familyor the columns of a multiple alignment of that famil...