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» Efficient protein alignment algorithm for protein search
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GCB
2000
Springer
99views Biometrics» more  GCB 2000»
15 years 9 months ago
Structure Motif Discovery and Mining the PDB
We describe an algorithm for the automatic discovery of recurring patterns in protein structures. The patterns consist of individual residues having a defined order along the prote...
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, ...
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
16 years 17 days ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
IJDMB
2007
114views more  IJDMB 2007»
15 years 5 months ago
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks
: The increasing availability of protein-protein interaction graphs (PPI) requires new efficient tools capable of extracting valuable biological knowledge from these networks. Amon...
Qiaofeng Yang, Stefano Lonardi
WABI
2009
Springer
16 years 17 days ago
FlexSnap: Flexible Non-sequential Protein Structure Alignment
Saeed Salem, Mohammed J. Zaki, Chris Bystroff
IPPS
2007
IEEE
16 years 8 days ago
A Comparative Study of Parallel Metaheuristics for Protein Structure Prediction on the Computational Grid
A comparative study of parallel metaheuristics executed in grid environments is proposed, having as case study a genetic algorithm, a simulated annealing algorithm and a random se...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...