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» Efficient protein alignment algorithm for protein search
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BMCBI
2006
129views more  BMCBI 2006»
15 years 6 months ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
SIAMSC
2008
182views more  SIAMSC 2008»
15 years 5 months ago
A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
Pratik Biswas, Kim-Chuan Toh, Yinyu Ye
ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
15 years 3 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
APBC
2004
166views Bioinformatics» more  APBC 2004»
15 years 7 months ago
A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network.
Subcellular localization is a key functional characteristic of proteins. An automatic, reliable and efficient prediction system for protein subcellular localization is needed for ...
Jian Guo, Yuanlie Lin, Zhirong Sun
RECOMB
2007
Springer
16 years 6 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...