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BMCBI
2008
214views more  BMCBI 2008»
15 years 6 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
BMCBI
2006
110views more  BMCBI 2006»
15 years 6 months ago
Design of a combinatorial DNA microarray for protein-DNA interaction studies
Background: Discovery of precise specificity of transcription factors is an important step on the way to understanding the complex mechanisms of gene regulation in eukaryotes. Rec...
Julian Mintseris, Michael B. Eisen
PVLDB
2008
82views more  PVLDB 2008»
15 years 6 months ago
Mining non-redundant high order correlations in binary data
Many approaches have been proposed to find correlations in binary data. Usually, these methods focus on pair-wise correlations. In biology applications, it is important to find co...
Xiang Zhang, Feng Pan, Wei Wang 0010, Andrew B. No...
ICDM
2010
IEEE
201views Data Mining» more  ICDM 2010»
15 years 4 months ago
Mining Closed Strict Episodes
Discovering patterns in a sequence is an important aspect of data mining. One popular choice of such patterns are episodes, patterns in sequential data describing events that often...
Nikolaj Tatti, Boris Cule
WWW
2005
ACM
16 years 7 months ago
Sampling search-engine results
We consider the problem of efficiently sampling Web search engine query results. In turn, using a small random sample instead of the full set of results leads to efficient approxi...
Aris Anagnostopoulos, Andrei Z. Broder, David Carm...