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IPPS
1996
IEEE
15 years 10 months ago
A Class of Interconnection Networks for Multicasting
Multicast, or one-to-many, communication arises frequently in parallel computing and telecommunication applications. Multicast networks can simultaneously support multiple multicas...
Yuanyuan Yang
ICPADS
2010
IEEE
15 years 4 months ago
Effective Performance Measurement at Petascale Using IPM
As supercomputers are being built from an ever increasing number of processing elements, the effort required to achieve a substantial fraction of the system peak performance is con...
Karl Fürlinger, Nicholas J. Wright, David Ski...
IPPS
2010
IEEE
15 years 4 months ago
Large-scale multi-dimensional document clustering on GPU clusters
Document clustering plays an important role in data mining systems. Recently, a flocking-based document clustering algorithm has been proposed to solve the problem through simulat...
Yongpeng Zhang, Frank Mueller, Xiaohui Cui, Thomas...
IPPS
2009
IEEE
16 years 1 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
15 years 6 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...