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ISMB
1996
15 years 8 months ago
Gene Prediction by Pattern Recognition and Homology Search
This paper presents an algorithm for combining pattern recognition-based exon prediction and database homologysearch in gene model construction. Thegoal is to use homologousgeneso...
Ying Xu, Edward C. Uberbacher
CORR
2010
Springer
105views Education» more  CORR 2010»
15 years 7 months ago
Human Speed-Accuracy Tradeoffs in Search
When foraging for information, users face a tradeoff between the accuracy and value of the acquired information and the time spent collecting it, a problem which also surfaces whe...
Christina Aperjis, Bernardo A. Huberman, Fang Wu
JBI
2008
159views Bioinformatics» more  JBI 2008»
15 years 7 months ago
SEGS: Search for enriched gene sets in microarray data
Gene Ontology (GO) terms are often used to interpret the results of microarray experiments. The most common approach is to perform Fisher's exact tests to find gene sets anno...
Igor Trajkovski, Nada Lavrac, Jakub Tolar
JMLR
2008
144views more  JMLR 2008»
15 years 7 months ago
Search for Additive Nonlinear Time Series Causal Models
Pointwise consistent, feasible procedures for estimating contemporaneous linear causal structure from time series data have been developed using multiple conditional independence ...
Tianjiao Chu, Clark Glymour
TIT
2008
122views more  TIT 2008»
15 years 6 months ago
An Efficient Pseudocodeword Search Algorithm for Linear Programming Decoding of LDPC Codes
Abstract--In linear programming (LP) decoding of a low-density parity-check (LDPC) code one minimizes a linear functional, with coefficients related to log-likelihood ratios, over ...
Michael Chertkov, Mikhail G. Stepanov