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RECOMB
2003
Springer
16 years 7 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
VLDB
2007
ACM
169views Database» more  VLDB 2007»
16 years 7 months ago
Peer-to-Peer Similarity Search in Metric Spaces
This paper addresses the efficient processing of similarity queries in metric spaces, where data is horizontally distributed across a P2P network. The proposed approach does not r...
Christos Doulkeridis, Akrivi Vlachou, Yannis Kotid...
VLDB
2008
ACM
131views Database» more  VLDB 2008»
16 years 7 months ago
Primal or dual: which promises faster spatiotemporal search?
The existing predictive spatiotemporal indexes can be classified into two categories, depending on whether they are based on the primal or dual methodology. Although we have gaine...
Yufei Tao, Xiaokui Xiao
IPPS
2009
IEEE
16 years 1 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
DEXA
2009
Springer
222views Database» more  DEXA 2009»
16 years 1 months ago
On Index-Free Similarity Search in Metric Spaces
Metric access methods (MAMs) serve as a tool for speeding similarity queries. However, all MAMs developed so far are index-based; they need to build an index on a given database. T...
Tomás Skopal, Benjamin Bustos