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» Deviation Analysis: A New Use of Model Checking
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FM
2008
Springer
93views Formal Methods» more  FM 2008»
15 years 8 months ago
Finding Minimal Unsatisfiable Cores of Declarative Specifications
Declarative specifications exhibit a variety of problems, such as inadvertently overconstrained axioms and underconstrained conjectures, that are hard to diagnose with model checki...
Emina Torlak, Felix Sheng-Ho Chang, Daniel Jackson
ASPLOS
2010
ACM
15 years 9 months ago
Butterfly analysis: adapting dataflow analysis to dynamic parallel monitoring
Online program monitoring is an effective technique for detecting bugs and security attacks in running applications. Extending these tools to monitor parallel programs is challeng...
Michelle L. Goodstein, Evangelos Vlachos, Shimin C...
BMCBI
2010
97views more  BMCBI 2010»
15 years 1 months ago
A semi-parametric Bayesian model for unsupervised differential co-expression analysis
Background: Differential co-expression analysis is an emerging strategy for characterizing disease related dysregulation of gene expression regulatory networks. Given pre-defined ...
Johannes M. Freudenberg, Siva Sivaganesan, Michael...
BMCBI
2008
132views more  BMCBI 2008»
15 years 6 months ago
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of
Background: Inferring cluster structure in microarray datasets is a fundamental task for the so-called -omic sciences. It is also a fundamental question in Statistics, Data Analys...
Raffaele Giancarlo, Davide Scaturro, Filippo Utro
BMCBI
2010
150views more  BMCBI 2010»
15 years 6 months ago
Systematic calibration of a cell signaling network model
Background: Mathematical modeling is being applied to increasingly complex biological systems and datasets; however, the process of analyzing and calibrating against experimental ...
Kyoung Ae Kim, Sabrina L. Spencer, John G. Albeck,...