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» Detecting Motifs from Sequences
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BMCBI
2006
136views more  BMCBI 2006»
15 years 6 months ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton
BMCBI
2010
91views more  BMCBI 2010»
15 years 6 months ago
Coverage statistics for sequence census methods
We study the shape of coverage functions resulting from the sequencing of random genome fragments, and show that they can be described by Galton-Watson trees. This extends standar...
Steven N. Evans, Valerie Hower, Lior Pachter
SIGKDD
2010
154views more  SIGKDD 2010»
15 years 25 days ago
A brief survey on sequence classification
Sequence classification has a broad range of applications such as genomic analysis, information retrieval, health informatics, finance, and abnormal detection. Different from the ...
Zhengzheng Xing, Jian Pei, Eamonn J. Keogh
BMCBI
2008
128views more  BMCBI 2008»
15 years 6 months ago
Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate reg
Background: Gene expression measurements from breast cancer (BrCa) tumors are established clinical predictive tools to identify tumor subtypes, identify patients showing poor/good...
David D. Smith, Pål Sætrom, Ola R. Sn&...
ICML
2005
IEEE
16 years 7 months ago
Predicting protein folds with structural repeats using a chain graph model
Protein fold recognition is a key step towards inferring the tertiary structures from amino-acid sequences. Complex folds such as those consisting of interacting structural repeat...
Yan Liu, Eric P. Xing, Jaime G. Carbonell