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» Density-Sensitive Evolutionary Clustering
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ECCB
2008
IEEE
16 years 10 days ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
FUZZIEEE
2007
IEEE
16 years 6 days ago
Survey of Rough and Fuzzy Hybridization
— This paper provides a broad overview of logical and black box approaches to fuzzy and rough hybridization. The logical approaches include theoretical, supervised learning, feat...
Pawan Lingras, Richard Jensen
ICPR
2006
IEEE
16 years 7 months ago
A Prototypes-Embedded Genetic K-means Algorithm
This paper presents a genetic algorithm (GA) for Kmeans clustering. Instead of the widely applied stringof-group-numbers encoding, we encode the prototypes of the clusters into th...
Hsin-Chia Fu, Hsin-Min Wang, Shih-Sian Cheng, Yi-H...
CEC
2007
IEEE
16 years 6 days ago
A co-evolutionary framework for regulatory motif discovery
Abstract— In previous work, we have shown how an evolutionary algorithm with a clustered population can be used to concurrently discover multiple regulatory motifs present within...
Michael A. Lones, Andy M. Tyrrell
BMCBI
2010
113views more  BMCBI 2010»
15 years 6 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu