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BMCBI
2002
108views more  BMCBI 2002»
15 years 6 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
HT
2005
ACM
16 years 15 days ago
Processing link structures and linkbases in the web's open world linking
Hyperlinks are an essential feature of the World Wide Web, highly responsible for its success. XLink improves on HTML’s linking capabilities in several ways. In particular, link...
François Bry, Michael Eckert
SP
2010
IEEE
152views Security Privacy» more  SP 2010»
15 years 4 months ago
Scalable Parametric Verification of Secure Systems: How to Verify Reference Monitors without Worrying about Data Structure Size
The security of systems such as operating systems, hypervisors, and web browsers depend critically on reference monitors to correctly enforce their desired security policy in the ...
Jason Franklin, Sagar Chaki, Anupam Datta, Arvind ...
EMNLP
2011
14 years 6 months ago
Watermarking the Outputs of Structured Prediction with an application in Statistical Machine Translation
We propose a general method to watermark and probabilistically identify the structured outputs of machine learning algorithms. Our method is robust to local editing operations and...
Ashish Venugopal, Jakob Uszkoreit, David Talbot, F...
SMA
2009
ACM
185views Solid Modeling» more  SMA 2009»
16 years 1 months ago
A dynamic data structure for flexible molecular maintenance and informatics
We present the “Dynamic Packing Grid” (DPG) data structure along with details of our implementation and performance results, for maintaining and manipulating flexible molecul...
Chandrajit L. Bajaj, Rezaul Alam Chowdhury, Muhibu...