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» Databases and Algorithms for Pathway Bioinformatics
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SAC
2004
ACM
15 years 11 months ago
Time-frequency feature detection for time-course microarray data
Gene clustering based on microarray data provides useful functional information to the working biologists. Many current gene-clustering algorithms rely on Euclidean-based distance...
Jiawu Feng, Paolo Emilio Barbano, Bud Mishra
BMCBI
2010
135views more  BMCBI 2010»
15 years 6 months ago
Integration and visualization of systems biology data in context of the genome
Background: High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization a...
J. Christopher Bare, Tie Koide, David J. Reiss, Da...
DAWAK
2004
Springer
15 years 11 months ago
Algorithms for Discovery of Frequent Superset, Rather than Frequent Subset
Abstract. In this paper, we propose a novel mining task: mining frequent superset from the database of itemsets that is useful in bioinformatics, e-learning systems, jobshop schedu...
Zhung-Xun Liao, Man-Kwan Shan
BMCBI
2010
100views more  BMCBI 2010»
15 years 6 months ago
Trimming of mammalian transcriptional networks using network component analysis
Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
Linh M. Tran, Daniel R. Hyduke, James C. Liao
CSB
2004
IEEE
110views Bioinformatics» more  CSB 2004»
15 years 9 months ago
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error
For the identification of novel proteins using MS/MS, de novo sequencing software computes one or several possible amino acid sequences (called sequence tags) for each MS/MS spect...
Yonghua Han, Bin Ma, Kaizhong Zhang