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BMCBI
2010
101views more  BMCBI 2010»
15 years 7 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
COMAD
2008
15 years 8 months ago
The Orion Uncertain Data Management System
Orion is a state-of-the-art uncertain database management system that extends the relational model to include probabilistic uncertain data as first call data types. This demonstra...
Sarvjeet Singh, Chris Mayfield, Sagar Mittal, Suni...
ICDE
2003
IEEE
134views Database» more  ICDE 2003»
16 years 8 months ago
Propagating XML Constraints to Relations
We present a technique for refining the design of relational storage for XML data based on XML key propagation. Three algorithms are presented: one checks whether a given function...
Susan B. Davidson, Wenfei Fan, Carmem S. Hara, Jin...
VLDB
2007
ACM
126views Database» more  VLDB 2007»
16 years 7 months ago
SOR: A Practical System for Ontology Storage, Reasoning and Search
Ontology, an explicit specification of shared conceptualization, has been increasingly used to define formal data semantics and improve data reusability and interoperability in en...
Chen Wang, Jean-Sébastien Brunner, Jing Lu,...
SIGMOD
2009
ACM
143views Database» more  SIGMOD 2009»
16 years 7 months ago
Data integration in mashups
Mashup is a new application development approach that allows users to aggregate multiple services to create a service for a new purpose. Even if the Mashup approach opens new and ...
Giusy Di Lorenzo, Hakim Hacid, Hye-Young Paik, Bou...