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BMCBI
2006
130views more  BMCBI 2006»
15 years 6 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...
JMLR
2010
101views more  JMLR 2010»
15 years 1 months ago
Exploiting Feature Covariance in High-Dimensional Online Learning
Some online algorithms for linear classification model the uncertainty in their weights over the course of learning. Modeling the full covariance structure of the weights can prov...
Justin Ma, Alex Kulesza, Mark Dredze, Koby Crammer...
IWANN
2009
Springer
16 years 1 months ago
On the Bond Graphs in the Delaunay-Tetrahedra of the Simplicial Decomposition of Spatial Protein Structures
The examination of straightforwardly definable discrete structures in nucleic acids and proteins turned out to be perhaps the most important development in our present knowledge a...
Rafael Ördög, Vince Grolmusz
187
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BMCBI
2008
123views more  BMCBI 2008»
15 years 7 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
BMCBI
2006
120views more  BMCBI 2006»
15 years 6 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...