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ISSAC
2005
Springer
119views Mathematics» more  ISSAC 2005»
16 years 4 days ago
Computing the multiplicity structure in solving polynomial systems
This paper presents a duality analysis and an algorithm for computing the multiplicity structure of a zero to a polynomial system, while the zero can be exact or approximate with ...
Barry H. Dayton, Zhonggang Zeng
COLING
2008
15 years 8 months ago
Word Sense Disambiguation for All Words using Tree-Structured Conditional Random Fields
We propose a supervised word sense disambiguation (WSD) method using tree-structured conditional random fields (TCRFs). By applying TCRFs to a sentence described as a dependency t...
Jun Hatori, Yusuke Miyao, Jun-ichi Tsujii
SAC
2004
ACM
16 years 2 days ago
A parallel algorithm for the extraction of structured motifs
In this work we propose a parallel algorithm for the efficient extraction of binding-site consensus from genomic sequences. This algorithm, based on an existing approach, extracts...
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T....
BMCBI
2010
86views more  BMCBI 2010»
15 years 6 months ago
Mining protein loops using a structural alphabet and statistical exceptionality
Background: Protein loops encompass 50% of protein residues in available three-dimensional structures. These regions are often involved in protein functions, e.g. binding site, ca...
Leslie Regad, Juliette Martin, Grégory Nuel...
BMCBI
2006
120views more  BMCBI 2006»
15 years 6 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner