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IJFCS
2008
110views more  IJFCS 2008»
15 years 7 months ago
Indexing Gapped-Factors Using a Tree
We present a data structure to index a specific kind of factors, that is of substrings, called gapped-factors. A gapped-factor is a factor containing a gap that is ignored during ...
Pierre Peterlongo, Julien Allali, Marie-France Sag...
KDD
2007
ACM
159views Data Mining» more  KDD 2007»
16 years 7 months ago
Constraint-driven clustering
Clustering methods can be either data-driven or need-driven. Data-driven methods intend to discover the true structure of the underlying data while need-driven methods aims at org...
Rong Ge, Martin Ester, Wen Jin, Ian Davidson
BMCBI
2008
77views more  BMCBI 2008»
15 years 7 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...
ICDM
2002
IEEE
114views Data Mining» more  ICDM 2002»
16 years 12 days ago
Online Algorithms for Mining Semi-structured Data Stream
In this paper, we study an online data mining problem from streams of semi-structured data such as XML data. Modeling semi-structured data and patterns as labeled ordered trees, w...
Tatsuya Asai, Hiroki Arimura, Kenji Abe, Shinji Ka...
BIOINFORMATICS
2006
106views more  BIOINFORMATICS 2006»
15 years 7 months ago
Identification of biochemical networks by S-tree based genetic programming
Motivation: Most previous approaches to model biochemical networks havefocusedeither on the characterization of a networkstructurewith a number of components or on the estimation ...
Dong-Yeon Cho, Kwang-Hyun Cho, Byoung-Tak Zhang