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EVOW
2006
Springer
15 years 10 months ago
Evolving the Structure of the Particle Swarm Optimization Algorithms
A new model for evolving the structure of a Particle Swarm Optimization (PSO) algorithm is proposed in this paper. The model is a hybrid technique that combines a Genetic Algorithm...
Laura Diosan, Mihai Oltean
BIOINFORMATICS
2006
130views more  BIOINFORMATICS 2006»
15 years 6 months ago
Memory efficient folding algorithms for circular RNA secondary structures
A small class of RNA molecules, in particular the tiny genomes of viroids, are circular. Yet most structure prediction algorithms handle only linear RNAs. The most straightforward ...
Ivo L. Hofacker, Peter F. Stadler
EVOW
2004
Springer
16 years 5 days ago
A Memetic Algorithm for Protein Structure Prediction in a 3D-Lattice HP Model
This paper presents a memetic algorithm with self-adaptive local search, applied to protein structure prediction in an HP, cubiclattice model. Besides describing in detail how the ...
Andrea Bazzoli, Andrea Tettamanzi
ARCS
2004
Springer
16 years 5 days ago
Implementation and Evaluation of a Parallel-External Algorithm for Cycle Structure Computation on a PC-Cluster
Abstract: We report on our experiences with the implementation of a parallel algorithm to compute the cycle structure of a permutation given as an oracle. As a sub-problem, the cyc...
Latifa Boursas, Jörg Keller
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
16 years 1 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...