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BMCBI
2011
14 years 10 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
DASFAA
2009
IEEE
253views Database» more  DASFAA 2009»
15 years 10 months ago
Implementing and Optimizing Fine-Granular Lock Management for XML Document Trees
Abstract. Fine-grained lock protocols with lock modes and lock granules adjusted to the various XML processing models, allow for highly concurrent transaction processing on XML tre...
Sebastian Bächle, Theo Härder, Michael P...
BMCBI
2005
156views more  BMCBI 2005»
15 years 6 months ago
DynGO: a tool for visualizing and mining of Gene Ontology and its associations
Background: A large volume of data and information about genes and gene products has been stored in various molecular biology databases. A major challenge for knowledge discovery ...
Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu
PODS
2011
ACM
238views Database» more  PODS 2011»
14 years 9 months ago
Beyond simple aggregates: indexing for summary queries
Database queries can be broadly classified into two categories: reporting queries and aggregation queries. The former retrieves a collection of records from the database that mat...
Zhewei Wei, Ke Yi
ICML
2005
IEEE
16 years 7 months ago
Unsupervised evidence integration
Many biological propositions can be supported by a variety of different types of evidence. It is often useful to collect together large numbers of such propositions, together with...
Philip M. Long, Vinay Varadan, Sarah Gilman, Mark ...