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» DNA Computing Based on Splicing: Universality Results
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JUCS
2006
68views more  JUCS 2006»
15 years 5 months ago
Time-varying H Systems Revisited
: We cast a new look on time-varying distributed H systems. In their original definition, where only new strings are passed to the next component, this language definition in itsel...
Remco Loos
BMCBI
2008
143views more  BMCBI 2008»
15 years 6 months ago
Automatic detection of exonic splicing enhancers (ESEs) using SVMs
Background: Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for S...
Britta Mersch, Alexander Gepperth, Sándor S...
RECOMB
2007
Springer
16 years 6 months ago
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
Our group has recently developed a compact, universal protein binding microarray (PBM) that can be used to determine the binding preferences of transcription factors (TFs) [1]. Thi...
Anthony A. Philippakis, Aaron M. Qureshi, Michael ...
TCS
2008
15 years 5 months ago
On the weight of universal insertion grammars
We study the computational power of pure insertion grammars. We show that pure insertion grammars of weight 3 can characterize all recursively enumerable languages. This is achiev...
Lila Kari, Petr Sosík
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
15 years 9 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....