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SCFBM
2008
92views more  SCFBM 2008»
15 years 6 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
DEXAW
2008
IEEE
120views Database» more  DEXAW 2008»
16 years 28 days ago
Self-Similarity Metric for Index Pruning in Conceptual Vector Space Models
— One of the critical issues in search engines is the size of search indexes: as the number of documents handled by an engine increases, the search must preserve its efficiency,...
Dario Bonino, Fulvio Corno
PPOPP
2006
ACM
16 years 12 days ago
On-line automated performance diagnosis on thousands of processes
Performance analysis tools are critical for the effective use of large parallel computing resources, but existing tools have failed to address three problems that limit their scal...
Philip C. Roth, Barton P. Miller
GECCO
2008
Springer
132views Optimization» more  GECCO 2008»
15 years 7 months ago
Hybridizing an evolutionary algorithm with mathematical programming techniques for multi-objective optimization
In recent years, the development of multi-objective evolutionary algorithms (MOEAs) hybridized with mathematical programming techniques has significantly increased. However, most...
Saúl Zapotecas Martínez, Carlos A. C...
BMCBI
2007
123views more  BMCBI 2007»
15 years 6 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel