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» Correlational spectral clustering
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BMCBI
2010
146views more  BMCBI 2010»
15 years 6 months ago
Revealing and avoiding bias in semantic similarity scores for protein pairs
Background: Semantic similarity scores for protein pairs are widely applied in functional genomic researches for finding functional clusters of proteins, predicting protein functi...
Jing Wang 0004, Xianxiao Zhou, Jing Zhu, Chenggui ...
BMCBI
2010
150views more  BMCBI 2010»
15 years 6 months ago
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
Background: The reconstruction of protein complexes from the physical interactome of organisms serves as a building block towards understanding the higher level organization of th...
Sriganesh Srihari, Kang Ning, Hon Wai Leong
CORR
2010
Springer
143views Education» more  CORR 2010»
15 years 6 months ago
Connectivity in Sub-Poisson Networks
: We consider a class of point processes, which we call sub-Poisson; these are point processes that can be directionallyconvexly (dcx) dominated by some Poisson point process. The ...
Bartlomiej Blaszczyszyn, D. Yogeshwaran
BMCBI
2006
97views more  BMCBI 2006»
15 years 6 months ago
REEF: searching REgionally Enriched Features in genomes
Background: In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional D...
Alessandro Coppe, Gian Antonio Danieli, Stefania B...
BMCBI
2005
94views more  BMCBI 2005»
15 years 6 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel