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216
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FM
2008
Springer
152views Formal Methods» more  FM 2008»
15 years 8 months ago
Constraint Prioritization for Efficient Analysis of Declarative Models
The declarative modeling language Alloy and its automatic analyzer provide an effective tool-set for building designs of systems and checking their properties. The Alloy Analyzer p...
Engin Uzuncaova, Sarfraz Khurshid
BIOCOMP
2007
15 years 8 months ago
Stability Analysis of Genetic Regulatory Network with Additive Noises
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
Yufang Jin
BMCBI
2010
135views more  BMCBI 2010»
15 years 7 months ago
Lists2Networks: Integrated analysis of gene/protein lists
Background: Systems biologists are faced with the difficultly of analyzing results from large-scale studies that profile the activity of many genes, RNAs and proteins, applied in ...
Alexander Lachmann, Avi Ma'ayan
BMCBI
2008
110views more  BMCBI 2008»
15 years 7 months ago
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
Background: Hypermethylation of promoter CpG islands is strongly correlated to transcriptional gene silencing and epigenetic maintenance of the silenced state. As well as its role...
Wei Dai, Jens M. Teodoridis, Janet Graham, Constan...
184
Voted
BMCBI
2006
87views more  BMCBI 2006»
15 years 7 months ago
MathDAMP: a package for differential analysis of metabolite profiles
Background: With the advent of metabolomics as a powerful tool for both functional and biomarker discovery, the identification of specific differences between complex metabolite p...
Richard Baran, Hayataro Kochi, Natsumi Saito, Mako...