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BMCBI
2010
105views more  BMCBI 2010»
15 years 6 months ago
Predicting phenotypic traits of prokaryotes from protein domain frequencies
Background: Establishing the relationship between an organism's genome sequence and its phenotype is a fundamental challenge that remains largely unsolved. Accurately predict...
Thomas Lingner, Stefanie Mühlhausen, Toni Gab...
NAR
2006
120views more  NAR 2006»
15 years 6 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...
BMCBI
2005
98views more  BMCBI 2005»
15 years 6 months ago
DCD - a novel plant specific domain in proteins involved in development and programmed cell death
Background: Recognition of microbial pathogens by plants triggers the hypersensitive reaction, a common form of programmed cell death in plants. These dying cells generate signals...
Raimund Tenhaken, Tobias Doerks, Peer Bork
SAS
2009
Springer
162views Formal Methods» more  SAS 2009»
16 years 6 months ago
Interval Polyhedra: An Abstract Domain to Infer Interval Linear Relationships
Polyhedra: An Abstract Domain to Infer Interval Linear Relationships Liqian Chen1,2 , Antoine Min?e2,3 , Ji Wang1 , and Patrick Cousot2,4 1 National Laboratory for Parallel and Dis...
Antoine Miné, Ji Wang, Liqian Chen, Patrick...
BMCBI
2008
116views more  BMCBI 2008»
15 years 6 months ago
IgTM: An algorithm to predict transmembrane domains and topology in proteins
Background: Due to their role of receptors or transporters, membrane proteins play a key role in many important biological functions. In our work we used Grammatical Inference (GI...
Piedachu Peris, Damián López, Marcel...