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BMCBI
2006
112views more  BMCBI 2006»
15 years 6 months ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...
BMCBI
2006
127views more  BMCBI 2006»
15 years 6 months ago
A graph-search framework for associating gene identifiers with documents
Background: One step in the model organism database curation process is to find, for each article, the identifier of every gene discussed in the article. We consider a relaxation ...
William W. Cohen, Einat Minkov
BMCBI
2006
137views more  BMCBI 2006»
15 years 6 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
BMCBI
2006
118views more  BMCBI 2006»
15 years 6 months ago
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis
Background: Concerns are often raised about the accuracy of microarray technologies and the degree of cross-platform agreement, but there are yet no methods which can unambiguousl...
Andrew J. Holloway, Alicia Oshlack, Dileepa S. Diy...
IEICET
2008
67views more  IEICET 2008»
15 years 6 months ago
Learning of Finite Unions of Tree Patterns with Internal Structured Variables from Queries
We consider the polynomial time learnability of finite unions of ordered tree patterns with internal structured variables, in the query learning model of Angluin (1988). An ordered...
Satoshi Matsumoto, Takayoshi Shoudai, Tomoyuki Uch...
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