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BMCBI
2010
136views more  BMCBI 2010»
15 years 7 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...
CORR
2010
Springer
66views Education» more  CORR 2010»
15 years 7 months ago
Polyominoes Simulating Arbitrary-Neighborhood Zippers and Tilings
This paper provides a bridge between the classical tiling theory and cellular automata on one side, and the complex neighborhood self-assembling situations that exist in practice,...
Lila Kari, Benoît Masson
BMCBI
2006
141views more  BMCBI 2006»
15 years 6 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
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BMCBI
2006
129views more  BMCBI 2006»
15 years 6 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
BMCBI
2006
116views more  BMCBI 2006»
15 years 6 months ago
Integrative missing value estimation for microarray data
Background: Missing value estimation is an important preprocessing step in microarray analysis. Although several methods have been developed to solve this problem, their performan...
Jianjun Hu, Haifeng Li, Michael S. Waterman, Xiang...