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» Conservativity in Structured Ontologies
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BIOCOMP
2010
15 years 4 months ago
Extraction of Protein Sequence Motifs Information by Bi-Clustering Algorithm
- The activities and function of proteins can potentially be determined by protein sequence motifs. Therefore, obtaining the universally conserved and crossed protein family bounda...
Vincent Yip, Bernard Chen, Sinan Kockara
BMCBI
2010
133views more  BMCBI 2010»
15 years 6 months ago
Translog, a web browser for studying the expression divergence of homologous genes
Background: Increasing amount of data from comparative genomics, and newly developed technologies producing accurate gene expression data facilitate the study of the expression di...
Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris ...
BMCBI
2008
138views more  BMCBI 2008»
15 years 6 months ago
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote ho
Background: Nonnegative matrix factorization (NMF) is a feature extraction method that has the property of intuitive part-based representation of the original features. This uniqu...
Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup...
SAC
2009
ACM
16 years 1 months ago
Measuring coherence between electronic and manual annotations in biological databases
The use of controlled structured vocabularies for annotation purposes, such as the Gene Ontology (GO) is currently one of the strategies to cope with the increasingly cumbersome t...
Catia Pesquita, Daniel Faria, Francisco M. Couto
SEMWEB
2009
Springer
16 years 28 days ago
Towards a Graphical Notation for OWL 2
The Ontology Definition Metamodel (ODM) defines a set of UML metamodels and profiles for development of RDF and OWL. The UML profiles in the ODM specification adapt UML notations t...
Elisa F. Kendall, Roy Bell, Roger Burkhart, Mark D...