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» Computing with Evolving Proteins
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NIPS
2008
15 years 8 months ago
Clusters and Coarse Partitions in LP Relaxations
We propose a new class of consistency constraints for Linear Programming (LP) relaxations for finding the most probable (MAP) configuration in graphical models. Usual cluster-base...
David Sontag, Amir Globerson, Tommi Jaakkola
APBC
2004
117views Bioinformatics» more  APBC 2004»
15 years 8 months ago
Detecting Local Symmetry Axis in 3-dimensional Virus Structures
This paper presents an efficient computational method to identify a local symmetry axis in 3-dimensional viral structures obtained using electron cryomicroscopy. Local symmetry is...
Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael...
PSB
2004
15 years 8 months ago
An Evidence Ontology for Use in Pathway/Genome Databases
An important emerging need in Model Organism Databases (MODs) and other bioinformatics databases (DBs) is that of capturing the scientific evidence that supports the information wi...
Peter D. Karp, Suzanne M. Paley, Cynthia J. Kriege...
SGP
2003
15 years 8 months ago
A geometric database for gene expression data
As the logical next step after sequencing the mouse genome, biologists have developed laboratory methods for rapidly determining where each of the 30K genes in the mouse genome is...
Joe D. Warren, Tao Ju, Gregor Eichele, Christina T...
ISMB
2000
15 years 8 months ago
Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization
This paper presents a framework called Parallel Experiment Planning (PEP) that is based on an abstraction of how experiments are performed in the domain of macromolecular crystall...
Vanathi Gopalakrishnan, Bruce G. Buchanan, John M....