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» Computing with Evolving Proteins
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EVOW
2009
Springer
16 years 1 months ago
A Memetic Algorithm for Phylogenetic Reconstruction with Maximum Parsimony
The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA, RNA or protein sequences while minimizing the number of evolutionary changes. Much work has been ...
Jean-Michel Richer, Adrien Goëffon, Jin-Kao H...
CF
2009
ACM
16 years 1 months ago
Quantitative analysis of sequence alignment applications on multiprocessor architectures
The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms...
Friman Sánchez, Alex Ramírez, Mateo ...
SMA
2009
ACM
137views Solid Modeling» more  SMA 2009»
16 years 1 months ago
Hierarchical molecular interfaces and solvation electrostatics
Electrostatic interactions play a significant role in determining the binding affinity of molecules and drugs. While significant effort has been devoted to the accurate computat...
Chandrajit L. Bajaj, Shun-Chuan Albert Chen, Guoli...
IPPS
2007
IEEE
16 years 28 days ago
Experiments with a Software Component Enabling NetSolve with Direct Communications in a Non-Intrusive and Incremental Way
The paper presents a software component that enables NetSolve with direct communications between servers in a non-intrusive and incremental way. Non-intrusiveness means that the s...
Xin Zuo, Alexey L. Lastovetsky
GRID
2007
Springer
16 years 24 days ago
Grid-based asynchronous replica exchange
— Replica exchange is a powerful sampling algorithm and can be effectively used for applications such as simulating the structure, function, folding, and dynamics of proteins and...
Zhen Li, Manish Parashar