EcoCyc (http://EcoCyc.org) is a comprehensive model organism database for Escherichia coli K-12 MG1655. From the scientific literature, EcoCyc captures the functions of individual...
Ingrid M. Keseler, Julio Collado-Vides, Alberto Sa...
Background: Traditional algorithms for hidden Markov model decoding seek to maximize either the probability of a state path or the number of positions of a sequence assigned to th...
We introduce the notion of a data topology and the problem of topology search over databases. A data topology summarizes the set of all possible relationships that connect a given...
In this paper, we present an algorithm to lay out a particular class of graphs coming from real case studies: the quasi-tree graph class. Protein and internet mappings projects ha...
In recent years it has become clear that techniques developed for concurrent programming are in fact very useful for the analysis of complex systems in biology. To some level of i...
Vinod A. Muganthan, Andrew Phillips, Maria Grazia ...