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» Computing with Evolving Proteins
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HPDC
2010
IEEE
15 years 7 months ago
Versioning for workflow evolution
Scientists working in eScience environments often use workflows to carry out their computations. Since the workflows evolve as the research itself evolves, these workflows can be ...
Eran Chinthaka Withana, Beth Plale, Roger S. Barga...
RECOMB
2006
Springer
16 years 7 months ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
ICPR
2008
IEEE
16 years 1 months ago
Embedding HMM's-based models in a Euclidean space: The topological hidden Markov models
One of the major limitations of HMM-based models is the inability to cope with topology: When applied to a visible observation (VO) sequence, HMM-based techniques have difficulty ...
Djamel Bouchaffra
ICTAI
2007
IEEE
16 years 1 months ago
A Java-Based Distributed Genetic Algorithm Framework
Distributed Genetic Algorithm (DGA) is one of the most promising choices among the optimization methods. In this paper we describe DGAFrame, a flexible framework for evolutionary...
Gabi Escuela, Yudith Cardinale, Jorge Gonzá...
IPPS
1999
IEEE
15 years 11 months ago
Large Scale Simulation of Parallel Molecular Dynamics
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
Pierre-Eric Bernard, Thierry Gautier, Denis Trystr...