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BMCBI
2004
141views more  BMCBI 2004»
15 years 6 months ago
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
Ruslan Sadreyev, Nick V. Grishin
TSP
2008
132views more  TSP 2008»
15 years 5 months ago
On Doubly Selective Channel Estimation Using Superimposed Training and Discrete Prolate Spheroidal Sequences
Abstract--Channel estimation and data detection for frequencyselective time-varying channels are considered using superimposed training. We employ a discrete prolate spheroidal bas...
Shuangchi He, Jitendra K. Tugnait
CORR
2008
Springer
128views Education» more  CORR 2008»
15 years 6 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov
BMCBI
2006
127views more  BMCBI 2006»
15 years 6 months ago
Automatic discovery of cross-family sequence features associated with protein function
Background: Methods for predicting protein function directly from amino acid sequences are useful tools in the study of uncharacterised protein families and in comparative genomic...
Markus Brameier, Josien Haan, Andrea Krings, Rober...
BMCBI
2006
159views more  BMCBI 2006»
15 years 6 months ago
EVEREST: automatic identification and classification of protein domains in all protein sequences
Background: Proteins are comprised of one or several building blocks, known as domains. Such domains can be classified into families according to their evolutionary origin. Wherea...
Elon Portugaly, Amir Harel, Nathan Linial, Michal ...