DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we h...
Tim H. J. M. Peeters, Huub van de Wetering, Mark W...
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
In the paper, a new hybrid genetic algorithm solving the DNA sequencing problem with negative and positive errors is presented. The algorithm has as its input a set of oligonucleo...
Jacek Blazewicz, Marta Kasprzak, Wojciech Kuroczyc...
Prediction of individual sequences is investigated for cases in which the decision maker observes a delayed version of the sequence, or is forced to issue his/her predictions a nu...