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VISSYM
2004
15 years 8 months ago
Case Study: Visualization of annotated DNA sequences
DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we h...
Tim H. J. M. Peeters, Huub van de Wetering, Mark W...
IPL
2006
67views more  IPL 2006»
15 years 6 months ago
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
Peter Damaschke
NAR
2006
107views more  NAR 2006»
15 years 6 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
HEURISTICS
2002
146views more  HEURISTICS 2002»
15 years 6 months ago
Hybrid Genetic Algorithm for DNA Sequencing with Errors
In the paper, a new hybrid genetic algorithm solving the DNA sequencing problem with negative and positive errors is presented. The algorithm has as its input a set of oligonucleo...
Jacek Blazewicz, Marta Kasprzak, Wojciech Kuroczyc...
TIT
2002
116views more  TIT 2002»
15 years 6 months ago
On delayed prediction of individual sequences
Prediction of individual sequences is investigated for cases in which the decision maker observes a delayed version of the sequence, or is forced to issue his/her predictions a nu...
Marcelo J. Weinberger, Erik Ordentlich