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IPPS
2005
IEEE
16 years 1 days ago
Comparison of Current BLAST Software on Nucleotide Sequences
The computational power needed for searching exponentially growing databases, such as GenBank, has increased dramatically. Three different implementations of the most widely used ...
I. Elizabeth Cha, Eric C. Rouchka
IPPS
2002
IEEE
15 years 11 months ago
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments
This paper is concerned with the efficient execution of multiplesequence alignmentmethodsin a multipleclientenvironment. Multiple sequence alignment (MSA) is a computationally ex...
Ümit V. Çatalyürek, Eric Stahlber...
RECOMB
1998
Springer
15 years 10 months ago
A polyhedral approach to RNA sequence structure alignment
Ribonucleic acid (RNA) is a polymer composed of four bases denoted A, C, G, and U. It is a generally single-stranded molecule where the bases form hydrogen bonds within the same m...
Hans-Peter Lenhof, Knut Reinert, Martin Vingron
BMCBI
2008
71views more  BMCBI 2008»
15 years 6 months ago
An improved string composition method for sequence comparison
Background: Historically, two categories of computational algorithms (alignment-based and alignment-free) have been applied to sequence comparison
Guoqing Lu, Shunpu Zhang, Xiang Fang
IPPS
2008
IEEE
16 years 26 days ago
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks
Despite the computing power of emerging technologies, predicting long RNA secondary structures with thermodynamics-based methods is still infeasible, especially if the structures ...
Michela Taufer, Thamar Solorio, Abel Licon, David ...