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RECOMB
2005
Springer
16 years 6 months ago
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Abstract. Current approaches for identification and detection of transcription factor binding sites rely on an extensive set of known target genes. Here we describe a novel structu...
Tommy Kaplan, Nir Friedman, Hanah Margalit
ICPR
2008
IEEE
16 years 25 days ago
Incremental clustering via nonnegative matrix factorization
Nonnegative matrix factorization (NMF) has been shown to be an efficient clustering tool. However, NMF`s batch nature necessitates recomputation of whole basis set for new samples...
Serhat Selcuk Bucak, Bilge Günsel
CVPR
2010
IEEE
15 years 11 months ago
Anatomical Parts-Based Regression Using Non-Negative Matrix Factorization
Non-negative matrix factorization (NMF) is an excellent tool for unsupervised parts-based learning, but proves to be ineffective when parts of a whole follow a specific pattern. ...
Swapna Joshi, Karthikeyan Shanmugavadivel, B.S. Ma...
BIBE
2007
IEEE
159views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
Non-negative Tensor Factorization Based on Alternating Large-scale Non-negativity-constrained Least Squares
Non-negative matrix factorization (NMF) and non-negative tensor factorization (NTF) have attracted much attention and have been successfully applied to numerous data analysis probl...
Hyunsoo Kim, Haesun Park, Lars Eldén
BMCBI
2006
124views more  BMCBI 2006»
15 years 6 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet