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BMCBI
2004
117views more  BMCBI 2004»
15 years 6 months ago
CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
Background: All known genomes code for a large number of transcription factors. It is important to develop methods that will reveal how these transcription factors act on a genome...
Henry R. Bigelow, Adam S. Wenick, Allan Wong, Oliv...
BMCBI
2007
147views more  BMCBI 2007»
15 years 6 months ago
Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain specific combinations of binding sites for various transcription factors. Althoug...
Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, ...
SIAMSC
2008
123views more  SIAMSC 2008»
15 years 6 months ago
Balanced Incomplete Factorization
In this paper we present a new incomplete factorization of a square matrix into triangular factors in which we get standard LU or LDLT factors (direct factors) and their inverses (...
Rafael Bru, José Marín, José ...
BMCBI
2007
168views more  BMCBI 2007»
15 years 6 months ago
Bayesian model-based inference of transcription factor activity
Background: In many approaches to the inference and modeling of regulatory interactions using microarray data, the expression of the gene coding for the transcription factor is co...
Simon Rogers, Raya Khanin, Mark Girolami
WSDM
2010
ACM
214views Data Mining» more  WSDM 2010»
16 years 3 months ago
Pairwise Interaction Tensor Factorization for Personalized Tag Recommendation
Tagging plays an important role in many recent websites. Recommender systems can help to suggest a user the tags he might want to use for tagging a specific item. Factorization mo...
Steffen Rendle, Lars Schmidt-Thieme