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BMCBI
2005
116views more  BMCBI 2005»
15 years 6 months ago
WEBnm@: a web application for normal mode analyses of proteins
Background: Normal mode analysis (NMA) has become the method of choice to investigate the slowest motions in macromolecular systems. NMA is especially useful for large biomolecula...
Siv Midtun Hollup, Gisle Sælensminde, Nathal...
BMCBI
2005
151views more  BMCBI 2005»
15 years 6 months ago
stam - a Bioconductor compliant R package for structured analysis of microarray data
Background: Genome wide microarray studies have the potential to unveil novel disease entities. Clinically homogeneous groups of patients can have diverse gene expression profiles...
Claudio Lottaz, Rainer Spang
BMCBI
2011
15 years 1 months ago
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Background: Molecular database search tools need statistical models to assess the significance for the resulting hits. In the classical approach one asks the question how probable...
Stefan Wolfsheimer, Inke Herms, Sven Rahmann, Alex...
CIKM
2011
Springer
14 years 6 months ago
Building directories for social tagging systems
Today, a number of algorithms exist for constructing tag hierarchies from social tagging data. While these algorithms were designed with ontological goals in mind, we know very li...
Denis Helic, Markus Strohmaier
SODA
2012
ACM
170views Algorithms» more  SODA 2012»
13 years 9 months ago
Compression via matroids: a randomized polynomial kernel for odd cycle transversal
The Odd Cycle Transversal problem (OCT) asks whether a given graph can be made bipartite by deleting at most k of its vertices. In a breakthrough result Reed, Smith, and Vetta (Op...
Stefan Kratsch, Magnus Wahlström